Variant report

Variant	rs16930094
Chromosome Location	chr11:34521649-34521650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10836233	0.87[CEU][hapmap]
rs10836250	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs11032716	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11032717	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11608027	0.87[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803540	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1408034	0.87[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs1408036	0.87[CEU][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs17881488	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1980719	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs2073059	0.87[CEU][hapmap];0.81[MKK][hapmap]
rs2274044	0.87[CEU][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs2284364	0.80[AMR][1000 genomes]
rs2420387	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3758730	0.87[CEU][hapmap]
rs7106007	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7947841	0.87[CEU][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv897211	chr11:34514941-34609541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34518200-34522000	Weak transcription	Gastric	stomach
2	chr11:34518400-34534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34519400-34521800	Weak transcription	HepG2	liver
4	chr11:34520200-34522600	Weak transcription	Fetal Lung	lung
5	chr11:34520600-34522600	Weak transcription	Lung	lung
6	chr11:34521000-34521800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:34521000-34522800	Enhancers	Hela-S3	cervix
8	chr11:34521200-34524000	Enhancers	Adipose Nuclei	Adipose
9	chr11:34521600-34521800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:34521600-34522000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:34521600-34522400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:34521600-34524400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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