Variant report

Variant	rs16931692
Chromosome Location	chr12:4881738-4881739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17783475	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4869800-4884200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:4873200-4881800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:4873400-4889400	Weak transcription	Ovary	ovary
5	chr12:4877000-4885800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:4878200-4885000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:4880600-4884200	Weak transcription	Lung	lung
8	chr12:4880800-4882000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:4880800-4884400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:4880800-4884800	Weak transcription	Brain Anterior Caudate	brain
11	chr12:4881000-4881800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:4881000-4882000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr12:4881000-4882200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:4881000-4882800	Strong transcription	Fetal Brain Female	brain
15	chr12:4881200-4882000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr12:4881400-4882200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:4881400-4882800	Strong transcription	Brain Germinal Matrix	brain
18	chr12:4881600-4883000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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