Variant report

Variant	rs16931910
Chromosome Location	chr9:117618309-117618310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13300483	0.80[ASN][1000 genomes]
rs2006996	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2208641	1.00[YRI][hapmap]
rs4979466	0.86[ASN][1000 genomes]
rs4979467	0.85[ASN][1000 genomes]
rs7043505	0.86[ASN][1000 genomes]
rs7043832	0.83[ASN][1000 genomes]
rs7043898	0.83[ASN][1000 genomes]
rs7468552	0.80[ASN][1000 genomes]
rs911604	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs998410	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
4	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach
6	chr9:117616800-117619000	Enhancers	HUVEC	blood vessel
7	chr9:117617400-117618800	Enhancers	Osteobl	bone
8	chr9:117617400-117619400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:117617400-117619400	Enhancers	Adipose Nuclei	Adipose
10	chr9:117617400-117620000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:117617600-117618800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:117617600-117618800	Enhancers	NHDF-Ad	bronchial
13	chr9:117617800-117618800	Enhancers	HSMM	muscle
14	chr9:117617800-117619200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:117617800-117619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:117617800-117620000	Enhancers	NHLF	lung
17	chr9:117618000-117619200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:117618000-117619200	Enhancers	NHEK	skin
19	chr9:117618200-117618400	Enhancers	Rectal Smooth Muscle	rectum
20	chr9:117618200-117618600	Weak transcription	HMEC	breast
21	chr9:117618200-117618800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:117618200-117619400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links