Variant report

Variant	rs16932112
Chromosome Location	chr11:15829420-15829421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10500818	0.87[AMR][1000 genomes]
rs12099094	0.87[AMR][1000 genomes]
rs16932070	1.00[AMR][1000 genomes]
rs16932128	0.87[AMR][1000 genomes]
rs60148294	0.87[AMR][1000 genomes]
rs60926816	0.87[AMR][1000 genomes]
rs7124471	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1037145	chr11:15818508-15830938	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15828000-15830200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:15828800-15829600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:15828800-15829800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:15829200-15829800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:15829200-15829800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:15829200-15830600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:15829400-15829600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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