Variant report

Variant	rs16932958
Chromosome Location	chr8:67446010-67446011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67444540..67447904-chr8:67523578..67525428,3	MCF-7	breast:
2	chr8:67444611..67447354-chr8:67624373..67626191,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction
ENSG00000185697	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11995298	1.00[CEU][hapmap]
rs16932954	1.00[CEU][hapmap]
rs16932959	1.00[EUR][1000 genomes]
rs3824258	1.00[MEX][hapmap]
rs7832611	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67435600-67448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:67436000-67446800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:67436000-67448000	Weak transcription	Spleen	Spleen
4	chr8:67437800-67454000	Weak transcription	Psoas Muscle	Psoas
5	chr8:67439800-67454400	Weak transcription	Right Atrium	heart
6	chr8:67443000-67449600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:67443200-67447600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:67443400-67447000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:67443400-67448000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:67443600-67447600	Enhancers	NHLF	lung
11	chr8:67443600-67449400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:67443600-67450200	Enhancers	Placenta	Placenta
13	chr8:67443800-67446800	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:67443800-67447600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr8:67443800-67447600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:67443800-67449400	Enhancers	HSMMtube	muscle
17	chr8:67443800-67449600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:67444200-67446400	Weak transcription	Liver	Liver
19	chr8:67444200-67446800	Enhancers	Brain Hippocampus Middle	brain
20	chr8:67444200-67446800	Weak transcription	Fetal Heart	heart
21	chr8:67444200-67447000	Weak transcription	Left Ventricle	heart
22	chr8:67444200-67447800	Weak transcription	Aorta	Aorta
23	chr8:67444200-67448200	Enhancers	Brain Cingulate Gyrus	brain
24	chr8:67444200-67454000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:67444400-67447000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:67444600-67446200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr8:67444600-67448800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr8:67444800-67447200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr8:67444800-67449000	Enhancers	Fetal Thymus	thymus
30	chr8:67444800-67449400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr8:67445000-67446400	Flanking Active TSS	Dnd41	blood
32	chr8:67445000-67446600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr8:67445000-67446600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr8:67445000-67446600	Enhancers	Hela-S3	cervix
35	chr8:67445000-67447200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr8:67445000-67447400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:67445000-67448800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:67445000-67449600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:67445000-67449800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr8:67445000-67449800	Enhancers	Primary B cells from peripheral blood	blood
41	chr8:67445200-67446200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr8:67445200-67446600	Enhancers	Fetal Brain Female	brain
43	chr8:67445200-67447000	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr8:67445200-67447200	Enhancers	Primary B cells from cord blood	blood
45	chr8:67445200-67447200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr8:67445200-67447200	Enhancers	Fetal Brain Male	brain
47	chr8:67445200-67447200	Enhancers	Fetal Lung	lung
48	chr8:67445200-67449000	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr8:67445200-67449000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr8:67445400-67446200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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