Variant report

Variant	rs16933999
Chromosome Location	chr8:68920617-68920618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34214642	1.00[AMR][1000 genomes]
rs35141291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530518	chr8:68521420-68973114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831347	chr8:68849550-69033904	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68905000-68931200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:68911000-68926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:68911000-68926600	Weak transcription	Left Ventricle	heart
4	chr8:68914800-68922800	Weak transcription	Right Atrium	heart
5	chr8:68915400-68926200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:68915800-68921000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:68916800-68926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:68918600-68943800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:68919200-68924200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:68920200-68921400	Flanking Active TSS	HUVEC	blood vessel
11	chr8:68920400-68920800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:68920600-68920800	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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