Variant report

Variant	rs16934190
Chromosome Location	chr9:16181885-16181886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10114001	0.90[ASN][1000 genomes]
rs10962321	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12000929	0.92[ASN][1000 genomes]
rs12238080	0.81[ASN][1000 genomes]
rs16934196	0.84[ASN][1000 genomes]
rs28497748	0.86[ASN][1000 genomes]
rs28695497	0.85[ASN][1000 genomes]
rs7029730	0.88[ASN][1000 genomes]
rs7852086	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16172800-16182800	Weak transcription	Ovary	ovary
2	chr9:16178800-16185000	Enhancers	Primary T cells from cord blood	blood
3	chr9:16179800-16182000	Enhancers	Colon Smooth Muscle	Colon
4	chr9:16179800-16184800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16179800-16184800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:16179800-16192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:16180000-16183600	Weak transcription	Fetal Thymus	thymus
8	chr9:16180000-16184200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr9:16181000-16182400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:16181000-16184800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16181200-16182200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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