Variant report

Variant	rs16934777
Chromosome Location	chr8:69524413-69524414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11998496	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1347381	0.91[ASN][1000 genomes]
rs1369224	0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1369226	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs1434921	0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap]
rs1434922	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1434923	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1434924	0.91[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs1469788	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1473266	0.90[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1473267	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1529831	0.90[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs16934789	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs16934800	0.82[EUR][1000 genomes]
rs2060440	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs2164202	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2380484	0.91[ASN][1000 genomes]
rs35583718	0.88[ASN][1000 genomes]
rs35678561	0.87[EUR][1000 genomes]
rs3857960	0.87[EUR][1000 genomes]
rs3905598	0.87[EUR][1000 genomes]
rs4009115	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs4380922	0.87[EUR][1000 genomes]
rs4421338	0.83[ASN][1000 genomes]
rs4477005	0.90[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap]
rs60779448	0.87[ASN][1000 genomes]
rs6472409	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6472410	0.87[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6472411	0.91[ASN][1000 genomes]
rs6980767	0.91[ASN][1000 genomes]
rs6981539	0.83[ASN][1000 genomes]
rs6982437	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6986162	0.88[ASN][1000 genomes]
rs7006075	0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap]
rs7013043	0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs7013431	0.91[ASN][1000 genomes]
rs73270368	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7825855	0.91[ASN][1000 genomes]
rs7831265	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7831621	0.88[ASN][1000 genomes]
rs7840013	0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap]
rs7845972	0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs892704	0.91[ASN][1000 genomes]
rs920016	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs920017	0.87[EUR][1000 genomes]
rs9692888	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs987125	0.91[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890981	chr8:69413110-69534542	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69524000-69525200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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