Variant report

Variant	rs16934814
Chromosome Location	chr9:16568190-16568191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10962490	0.85[AFR][1000 genomes]
rs10962491	0.86[YRI][hapmap]
rs12003277	0.90[YRI][hapmap]
rs16934813	0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs57946399	0.83[AMR][1000 genomes]
rs60445897	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6475064	0.85[YRI][hapmap]
rs73417482	0.83[AMR][1000 genomes]
rs73417498	0.83[AMR][1000 genomes]
rs73417499	0.83[AMR][1000 genomes]
rs73419408	0.83[AMR][1000 genomes]
rs73419411	0.83[AMR][1000 genomes]
rs73419419	0.83[AMR][1000 genomes]
rs73419428	0.81[AFR][1000 genomes]
rs73419430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419435	0.83[AMR][1000 genomes]
rs7858087	0.83[AMR][1000 genomes]
rs7861455	0.83[AMR][1000 genomes]
rs943746	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs943747	0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16546000-16568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:16552800-16570200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:16552800-16571000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:16552800-16571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:16553000-16570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:16553000-16575200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:16556400-16569200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16556400-16570600	Weak transcription	NHLF	lung
9	chr9:16556400-16575600	Weak transcription	HSMM	muscle
10	chr9:16560200-16571200	Weak transcription	Ovary	ovary
11	chr9:16560200-16571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16560200-16571600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:16564200-16570600	Weak transcription	Osteobl	bone
14	chr9:16564600-16570600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:16566600-16573000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:16567800-16570000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:16567800-16570000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:16568000-16568600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:16568000-16569600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:16568000-16570400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links