Variant report

Variant	rs16934884
Chromosome Location	chr12:29920945-29920946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29920312..29922564-chr12:29924302..29925807,2	K562	blood:
2	chr12:29918838..29921011-chr12:29921108..29922618,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74082513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529328	chr12:29692414-30246209	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv898953	chr12:29905322-29989292	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29880000-29921200	Weak transcription	Fetal Kidney	kidney
2	chr12:29898600-29921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:29904200-29928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:29904600-29927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:29904800-29924200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:29906600-29928400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:29908800-29925000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:29910400-29921400	Weak transcription	NHLF	lung
9	chr12:29910600-29921400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:29910600-29921400	Weak transcription	Osteobl	bone
11	chr12:29911800-29922200	Weak transcription	Ovary	ovary
12	chr12:29912000-29921400	Weak transcription	Fetal Stomach	stomach
13	chr12:29912800-29924000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:29916000-29921800	Weak transcription	HSMMtube	muscle
15	chr12:29916000-29922400	Weak transcription	Esophagus	oesophagus
16	chr12:29916000-29931400	Weak transcription	Pancreas	Pancrea
17	chr12:29916200-29922400	Weak transcription	Lung	lung
18	chr12:29916400-29921800	Weak transcription	Brain Anterior Caudate	brain
19	chr12:29916600-29921200	Weak transcription	NHDF-Ad	bronchial
20	chr12:29916600-29921400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:29916600-29921400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:29916600-29923000	Weak transcription	Liver	Liver
23	chr12:29916800-29921400	Weak transcription	Right Atrium	heart
24	chr12:29916800-29921600	Weak transcription	Fetal Heart	heart
25	chr12:29916800-29922000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr12:29916800-29922200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:29916800-29924400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:29916800-29925400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:29917000-29921200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr12:29917000-29921400	Weak transcription	Psoas Muscle	Psoas
31	chr12:29917000-29922000	Weak transcription	Brain Hippocampus Middle	brain
32	chr12:29917000-29922200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:29917000-29922200	Weak transcription	Spleen	Spleen
34	chr12:29917000-29924600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:29917000-29926000	Weak transcription	Right Ventricle	heart
36	chr12:29917600-29921400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:29918000-29921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr12:29918000-29924800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:29918600-29922200	Weak transcription	Small Intestine	intestine
40	chr12:29918800-29921000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr12:29918800-29921000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:29919600-29921400	Weak transcription	Colon Smooth Muscle	Colon
43	chr12:29919600-29921400	Weak transcription	Hela-S3	cervix
44	chr12:29919600-29921400	Weak transcription	HMEC	breast
45	chr12:29919600-29921800	Weak transcription	HSMM	muscle
46	chr12:29919600-29924400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr12:29919800-29921200	Weak transcription	Adipose Nuclei	Adipose
48	chr12:29919800-29921200	Weak transcription	Fetal Muscle Leg	muscle
49	chr12:29919800-29921400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr12:29919800-29921800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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