Variant report

Variant	rs16934893
Chromosome Location	chr9:16657436-16657437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16653386..16655989-chr9:16657272..16659036,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10118895	0.82[YRI][hapmap]
rs1029016	0.93[YRI][hapmap]
rs10738440	0.82[YRI][hapmap]
rs1415472	0.93[YRI][hapmap]
rs1538102	0.85[YRI][hapmap]
rs16934875	0.88[YRI][hapmap]
rs59379949	0.91[AFR][1000 genomes]
rs73421454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16640000-16670800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16646600-16661000	Weak transcription	HSMM	muscle
3	chr9:16650800-16657600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:16654200-16660400	Weak transcription	Esophagus	oesophagus
5	chr9:16654400-16657600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:16654400-16669200	Weak transcription	NHLF	lung
7	chr9:16654600-16657600	Enhancers	Colon Smooth Muscle	Colon
8	chr9:16654600-16657600	Enhancers	Osteobl	bone
9	chr9:16654800-16658200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:16655000-16658800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16655000-16666600	Weak transcription	Fetal Stomach	stomach
12	chr9:16655600-16657800	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:16655600-16661400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:16655800-16657600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16655800-16657600	Enhancers	Adipose Nuclei	Adipose
16	chr9:16655800-16657600	Enhancers	Ovary	ovary
17	chr9:16655800-16657600	Enhancers	Psoas Muscle	Psoas
18	chr9:16656000-16657600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:16656000-16657600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:16656200-16658800	Weak transcription	Fetal Lung	lung
21	chr9:16656400-16658600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:16656400-16660200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:16656400-16660800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:16656400-16661200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:16656600-16657600	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:16656600-16670800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:16656800-16658200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:16656800-16658400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:16657200-16659200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:16657400-16657600	Enhancers	NH-A	brain

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