Variant report

Variant	rs16936024
Chromosome Location	chr11:19047641-19047642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16935993	1.00[AMR][1000 genomes]
rs16936009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60441734	1.00[AMR][1000 genomes]
rs73434512	1.00[AMR][1000 genomes]
rs73434514	1.00[AMR][1000 genomes]
rs73434517	1.00[AMR][1000 genomes]
rs73434520	1.00[AMR][1000 genomes]
rs73434521	1.00[AMR][1000 genomes]
rs73434528	1.00[AMR][1000 genomes]
rs73434530	1.00[AMR][1000 genomes]
rs7934662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv832082	chr11:18889979-19047994	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv870101	chr11:19037931-19093952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19045400-19048000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:19045600-19048400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:19046400-19048800	Enhancers	Fetal Heart	heart
4	chr11:19046600-19050600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:19046800-19048200	Enhancers	Brain Germinal Matrix	brain
6	chr11:19047000-19047800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:19047000-19048000	Enhancers	HUVEC	blood vessel
8	chr11:19047200-19048000	Weak transcription	Right Atrium	heart
9	chr11:19047200-19048800	Enhancers	NHDF-Ad	bronchial
10	chr11:19047200-19050000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:19047400-19047800	Enhancers	Fetal Brain Female	brain
12	chr11:19047400-19048000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:19047600-19047800	Flanking Active TSS	Fetal Brain Male	brain
14	chr11:19047600-19047800	Enhancers	NHEK	skin
15	chr11:19047600-19048800	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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