Variant report

Variant	rs16937267
Chromosome Location	chr9:19011300-19011301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511670	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs10511671	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs10811112	0.91[CHB][hapmap]
rs10963906	0.88[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10963919	0.87[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10963920	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10963923	0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10963929	0.80[ASN][1000 genomes]
rs10963930	0.83[ASN][1000 genomes]
rs10963943	0.88[CHB][hapmap]
rs10963953	0.82[CHB][hapmap]
rs10963955	0.81[CHB][hapmap]
rs10963962	0.82[CHB][hapmap]
rs10963964	0.82[CHB][hapmap]
rs12238548	0.87[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13284130	0.88[ASN][1000 genomes]
rs13298563	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13302453	0.90[CHB][hapmap]
rs16937320	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs1932451	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2291502	0.82[CHB][hapmap];0.89[CHD][hapmap]
rs34507853	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35804618	1.00[AFR][1000 genomes]
rs3780221	0.82[CHB][hapmap]
rs7031392	0.81[CHB][hapmap];0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs7865126	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892699	chr9:18945868-19025693	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv892701	chr9:18999837-19032907	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16937267	SCARNA8	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19009600-19012400	Weak transcription	Fetal Stomach	stomach
2	chr9:19010000-19013000	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links