Variant report

Variant	rs16939426
Chromosome Location	chr8:78031412-78031413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1452811	0.94[YRI][hapmap]
rs16939428	0.85[AMR][1000 genomes]
rs16939446	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2123395	0.85[AFR][1000 genomes]
rs6985065	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78030000-78031800	Enhancers	Osteobl	bone
2	chr8:78030000-78033000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:78030000-78033000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:78030200-78032800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:78030200-78033200	Enhancers	NHEK	skin
6	chr8:78030400-78031800	Enhancers	GM12878-XiMat	blood
7	chr8:78030400-78032800	Enhancers	Hela-S3	cervix
8	chr8:78030600-78031800	Flanking Active TSS	HUVEC	blood vessel
9	chr8:78030600-78032800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:78030600-78032800	Enhancers	HSMMtube	muscle
11	chr8:78030600-78033000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:78030800-78031600	Enhancers	HMEC	breast
13	chr8:78030800-78031800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:78030800-78032800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:78030800-78032800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:78031000-78031600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:78031000-78032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:78031000-78033000	Enhancers	NH-A	brain
19	chr8:78031200-78031600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:78031200-78031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:78031200-78032800	Enhancers	HSMM	muscle
22	chr8:78031200-78033000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:78031200-78033600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr8:78031400-78032800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:78031400-78032800	Enhancers	Fetal Muscle Leg	muscle
26	chr8:78031400-78032800	Enhancers	Fetal Stomach	stomach
27	chr8:78031400-78033000	Enhancers	Cortex derived primary cultured neurospheres	brain

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