Variant report

Variant	rs16939432
Chromosome Location	chr8:78043305-78043306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1452811	0.83[AMR][1000 genomes]
rs16939446	0.83[AMR][1000 genomes]
rs2123395	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020007	chr8:78021376-78059834	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78041400-78043400	Enhancers	Fetal Heart	heart
2	chr8:78042600-78043400	Enhancers	Fetal Brain Male	brain
3	chr8:78042800-78043400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:78042800-78043400	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr8:78042800-78043400	Enhancers	Dnd41	blood
6	chr8:78042800-78043600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:78042800-78043600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:78043000-78043400	Active TSS	Brain Angular Gyrus	brain
9	chr8:78043000-78043400	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr8:78043000-78043400	Flanking Active TSS	Fetal Muscle Leg	muscle
11	chr8:78043000-78043400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr8:78043200-78043400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:78043200-78043400	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr8:78043200-78043400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr8:78043200-78043400	Active TSS	Brain Substantia Nigra	brain
16	chr8:78043200-78043400	Flanking Active TSS	HSMMtube	muscle
17	chr8:78043200-78043600	Weak transcription	Brain Germinal Matrix	brain
18	chr8:78043200-78043600	Enhancers	Fetal Brain Female	brain
19	chr8:78043200-78044000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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