Variant report

Variant	rs16939586
Chromosome Location	chr8:78881683-78881684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11782881	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674696	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12677700	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678740	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12680165	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16939580	0.86[ASN][1000 genomes]
rs35406889	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56085826	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72671287	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672725	0.94[ASN][1000 genomes]
rs72672737	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7843257	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs880091	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021008	chr8:78540652-78902770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv539651	chr8:78540652-78902770	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2752267	chr8:78661586-78995994	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034645	chr8:78782998-78996230	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv891054	chr8:78785042-78935739	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78879800-78881800	Weak transcription	Fetal Intestine Small	intestine
2	chr8:78880000-78881800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:78881200-78881800	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr8:78881400-78881800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:78881400-78881800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:78881400-78881800	Active TSS	Osteobl	bone
7	chr8:78881400-78882000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:78881600-78881800	Active TSS	Adipose Nuclei	Adipose
9	chr8:78881600-78882000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:78881600-78883200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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