Variant report

Variant	rs16939881
Chromosome Location	chr15:58471979-58471980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58351815..58354737-chr15:58471635..58473722,2	K562	blood:
2	chr15:57615195..57617935-chr15:58470715..58472691,2	K562	blood:
3	chr15:58402611..58405043-chr15:58470858..58473947,6	K562	blood:
4	chr15:58355374..58360159-chr15:58469656..58474821,10	K562	blood:
5	chr15:58348390..58350453-chr15:58469668..58473033,3	K562	blood:
6	chr15:58402733..58404852-chr15:58471216..58473457,2	K562	blood:
7	chr15:58305878..58307859-chr15:58469628..58472033,2	K562	blood:
8	chr15:58471240..58473438-chr15:58477636..58480344,3	K562	blood:
9	chr15:58467290..58469519-chr15:58470114..58472151,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259285	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16953360	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Metabolite levels	22916037	GWAS catalog

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58458400-58477800	Strong transcription	Liver	Liver
3	chr15:58461800-58473000	Weak transcription	Pancreas	Pancrea
4	chr15:58467400-58474600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:58470800-58473200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:58470800-58473800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:58471000-58473200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:58471000-58473200	Enhancers	HMEC	breast
9	chr15:58471200-58472600	Flanking Active TSS	K562	blood
10	chr15:58471200-58473000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:58471400-58472400	Enhancers	Left Ventricle	heart
12	chr15:58471400-58472400	Genic enhancers	Spleen	Spleen
13	chr15:58471400-58472600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:58471600-58472600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
16	chr15:58471800-58472000	Flanking Active TSS	NHEK	skin
17	chr15:58471800-58472200	Enhancers	Fetal Heart	heart
18	chr15:58471800-58472200	Enhancers	HSMM	muscle
19	chr15:58471800-58472200	Enhancers	NH-A	brain
20	chr15:58471800-58472400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:58471800-58472600	Flanking Active TSS	HUVEC	blood vessel
22	chr15:58471800-58472600	Enhancers	NHDF-Ad	bronchial
23	chr15:58471800-58472800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:58471800-58473000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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