Variant report

Variant	rs16941208
Chromosome Location	chr15:44165830-44165831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44158756..44161490-chr15:44163226..44166726,5	K562	blood:
2	chr15:44163547..44166358-chr15:44171239..44175142,4	K562	blood:
3	chr15:44158321..44161278-chr15:44164500..44166500,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16963757	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964249	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16976783	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1050263	chr15:44093927-44204047	Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44119600-44166000	Weak transcription	Spleen	Spleen
2	chr15:44119600-44169400	Weak transcription	Fetal Intestine Large	intestine
3	chr15:44119600-44172800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:44119600-44181800	Weak transcription	Small Intestine	intestine
5	chr15:44119600-44183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:44119800-44166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:44121000-44177600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:44124000-44166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:44128200-44167800	Weak transcription	Ovary	ovary
10	chr15:44128600-44167800	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:44131200-44167600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:44133000-44166000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:44144800-44181000	Weak transcription	HepG2	liver
14	chr15:44146800-44181600	Weak transcription	Gastric	stomach
15	chr15:44147600-44172000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:44148200-44166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:44149600-44166200	Weak transcription	A549	lung
18	chr15:44150600-44174600	Strong transcription	Dnd41	blood
19	chr15:44151600-44171200	Weak transcription	Placenta	Placenta
20	chr15:44151600-44181600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:44152000-44172800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr15:44152200-44166400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:44152600-44166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:44152600-44167800	Weak transcription	Aorta	Aorta
25	chr15:44152600-44168000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:44152600-44168600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:44152600-44169600	Weak transcription	Lung	lung
28	chr15:44152600-44180800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:44152800-44166200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:44153800-44166000	Weak transcription	NHLF	lung
31	chr15:44153800-44166200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:44153800-44172000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:44156200-44166000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:44156400-44166800	Strong transcription	Hela-S3	cervix
35	chr15:44156800-44169600	Weak transcription	NHDF-Ad	bronchial
36	chr15:44156800-44206400	Weak transcription	Fetal Brain Male	brain
37	chr15:44157400-44172200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:44158200-44174000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:44158400-44166000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:44158600-44166000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:44158600-44169600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:44158600-44172800	Weak transcription	Primary B cells from cord blood	blood
43	chr15:44158600-44180800	Weak transcription	Fetal Lung	lung
44	chr15:44158800-44173200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr15:44159000-44166000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:44159000-44166200	Weak transcription	Right Ventricle	heart
47	chr15:44159000-44167600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:44159000-44170400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:44159000-44171800	Weak transcription	Adipose Nuclei	Adipose
50	chr15:44159000-44172800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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