Variant report

Variant	rs16941816
Chromosome Location	chr15:60128747-60128748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16941689	1.00[MEX][hapmap]
rs7161850	1.00[MEX][hapmap]
rs74018163	1.00[AMR][1000 genomes]
rs74018164	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60125600-60128800	Enhancers	Fetal Thymus	thymus
2	chr15:60125600-60130400	Enhancers	Thymus	Thymus
3	chr15:60126000-60133200	Enhancers	Primary T cells from cord blood	blood
4	chr15:60128000-60129000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:60128200-60129400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:60128200-60129800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:60128400-60129800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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