Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16943123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943201	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16943207	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16943307	0.87[EUR][1000 genomes]
rs17729603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9555915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9555916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9560387	1.00[AMR][1000 genomes]
rs9583718	0.87[EUR][1000 genomes]
rs9583720	0.87[EUR][1000 genomes]
rs9583721	0.87[EUR][1000 genomes]
rs9583723	0.87[EUR][1000 genomes]
rs9583724	0.87[EUR][1000 genomes]
rs9588723	0.87[EUR][1000 genomes]
rs9588724	0.87[EUR][1000 genomes]
rs9588725	0.87[EUR][1000 genomes]
rs9588726	0.87[EUR][1000 genomes]
rs9588727	0.87[EUR][1000 genomes]
rs9588728	0.87[EUR][1000 genomes]
rs9588729	0.87[EUR][1000 genomes]
rs9588731	0.87[EUR][1000 genomes]
rs9588733	0.87[EUR][1000 genomes]
rs9588734	0.87[EUR][1000 genomes]
rs9588740	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1038982	chr13:90199563-90345091	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90267000-90280200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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