Variant report

Variant	rs16943374
Chromosome Location	chr18:24761768-24761769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16943293	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16943297	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16943314	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4800276	0.81[EUR][1000 genomes]
rs4800788	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55963048	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56023263	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56044850	0.81[EUR][1000 genomes]
rs56377830	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58873251	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61515494	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66678826	0.81[EUR][1000 genomes]
rs7237325	0.81[EUR][1000 genomes]
rs72882371	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72882373	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72882384	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72882394	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72882398	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72882402	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884315	0.81[EUR][1000 genomes]
rs72884327	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884328	0.82[AMR][1000 genomes]
rs72884335	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884338	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884359	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884365	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72884366	0.81[EUR][1000 genomes]
rs72884376	0.82[EUR][1000 genomes]
rs8093303	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909475	chr18:24687324-24776226	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv909476	chr18:24722839-24779601	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1810563	chr18:24727747-24773141	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24756200-24762200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:24756200-24764000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr18:24756600-24764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:24757800-24764000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:24758200-24762600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:24758200-24762800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:24758200-24762800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr18:24758200-24762800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:24758200-24762800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr18:24758200-24763000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr18:24758800-24763200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:24760400-24762600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr18:24761200-24763400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr18:24761600-24763200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:24761600-24764000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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