Variant report

Variant	rs16943692
Chromosome Location	chr18:25057139-25057140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12458904	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16943693	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1893230	1.00[EUR][1000 genomes]
rs73944928	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25053600-25063400	Weak transcription	Fetal Intestine Small	intestine
2	chr18:25055800-25057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:25056000-25057200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr18:25056200-25057200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr18:25056200-25057400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:25056400-25057600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:25056600-25060000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr18:25056600-25060200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr18:25057000-25057200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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