Variant report

Variant	rs16944146
Chromosome Location	chr15:45779008-45779009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45778786..45780311-chr15:45786816..45789298,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2453531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs56010797	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72711288	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72711302	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1523	chr15:45749900-45783825	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv519435	chr15:45777344-45779008	Strong transcription Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45750800-45781000	Weak transcription	Stomach Mucosa	stomach
2	chr15:45751200-45801600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:45754200-45801600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:45757000-45794600	Weak transcription	Colonic Mucosa	Colon
5	chr15:45757000-45801800	Weak transcription	Gastric	stomach
6	chr15:45767200-45813600	Weak transcription	Psoas Muscle	Psoas
7	chr15:45767400-45781000	Weak transcription	Lung	lung
8	chr15:45768200-45780200	Weak transcription	Fetal Stomach	stomach
9	chr15:45769200-45781400	Weak transcription	Osteobl	bone
10	chr15:45769200-45812000	Weak transcription	Small Intestine	intestine
11	chr15:45769400-45791800	Weak transcription	NH-A	brain
12	chr15:45769400-45794600	Weak transcription	Fetal Intestine Small	intestine
13	chr15:45769400-45794800	Weak transcription	Ovary	ovary
14	chr15:45769400-45813000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:45769600-45779200	Weak transcription	Liver	Liver
16	chr15:45769600-45780000	Weak transcription	Left Ventricle	heart
17	chr15:45769800-45794600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:45770200-45780000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:45770200-45781000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:45770800-45779600	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:45771000-45813400	Weak transcription	Right Ventricle	heart
22	chr15:45771200-45814000	Weak transcription	Placenta	Placenta
23	chr15:45771400-45780200	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:45772000-45779400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:45772000-45801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:45772200-45779200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:45772200-45791000	Weak transcription	HSMM	muscle
28	chr15:45773200-45814000	Weak transcription	Pancreas	Pancrea
29	chr15:45773400-45779400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:45773400-45790600	Weak transcription	HSMMtube	muscle
31	chr15:45773600-45779400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:45774600-45812800	Weak transcription	Fetal Brain Male	brain
33	chr15:45775400-45786600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:45775600-45781600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:45775600-45791800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:45775600-45812800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:45775800-45780200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:45776000-45800400	Weak transcription	Esophagus	oesophagus
39	chr15:45776600-45780800	Weak transcription	NHDF-Ad	bronchial
40	chr15:45776600-45783600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:45776800-45781800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr15:45777000-45781600	Strong transcription	Adipose Nuclei	Adipose
43	chr15:45777000-45781800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr15:45777200-45780800	Weak transcription	Fetal Kidney	kidney
45	chr15:45777200-45781800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr15:45777400-45779200	Weak transcription	Brain Anterior Caudate	brain
47	chr15:45777600-45779200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:45777600-45779200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:45777600-45779400	Weak transcription	Brain Substantia Nigra	brain
50	chr15:45777600-45781000	Weak transcription	Primary T cells from cord blood	blood

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