Variant report

Variant	rs16945339
Chromosome Location	chr13:91796274-91796275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91796194..91797761-chr13:91799990..91801947,2	K562	blood:
2	chr13:91794532..91796912-chr13:92012820..92014472,2	K562	blood:
3	chr13:91795824..91797926-chr13:92010509..92012771,2	K562	blood:
4	chr13:91795662..91797164-chr13:92022617..92025179,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10492550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428864	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12429106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429114	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12430283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1887206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3764128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583887	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9589108	1.00[EUR][1000 genomes]
rs9589109	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9589111	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9589112	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv900880	chr13:91625722-91848290	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
6	nsv900881	chr13:91704312-91829940	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
8	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
9	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91792200-91796600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:91794200-91796400	Weak transcription	Aorta	Aorta
3	chr13:91794600-91798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:91794800-91797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:91795200-91796400	Weak transcription	Fetal Lung	lung
6	chr13:91795200-91799200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:91795400-91796600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr13:91795400-91796800	Enhancers	Fetal Muscle Leg	muscle
9	chr13:91795400-91797200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:91795600-91796400	Enhancers	Adipose Nuclei	Adipose
11	chr13:91795600-91796800	Enhancers	NH-A	brain
12	chr13:91795600-91797000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr13:91795600-91798200	Weak transcription	Placenta	Placenta
14	chr13:91795800-91797000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr13:91795800-91797200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr13:91796000-91797200	Enhancers	Fetal Brain Male	brain
17	chr13:91796000-91797200	Enhancers	Fetal Heart	heart
18	chr13:91796000-91798000	Enhancers	Primary hematopoietic stem cells	blood
19	chr13:91796000-91798400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr13:91796200-91796800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:91796200-91797200	Enhancers	Skeletal Muscle Female	skeletal muscle

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