Variant report

Variant	rs16945667
Chromosome Location	chr13:91903307-91903308
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91892375..91894811-chr13:91902277..91905076,2	K562	blood:
2	chr13:91901797..91903631-chr13:91908143..91910086,2	K562	blood:
3	chr13:91897761..91904877-chr13:91998004..92004019,9	K562	blood:
4	chr13:91902307..91904789-chr13:92006399..92008765,3	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11842215	0.96[ASN][1000 genomes]
rs1330066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16945688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2149967	0.81[ASN][1000 genomes]
rs34957279	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59920274	0.88[ASN][1000 genomes]
rs6492533	0.81[ASN][1000 genomes]
rs66464720	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66468576	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66691665	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67147421	0.83[ASN][1000 genomes]
rs67195175	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67664047	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68126334	0.91[ASN][1000 genomes]
rs72638991	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72640305	0.85[EUR][1000 genomes]
rs7322798	0.81[ASN][1000 genomes]
rs73599638	0.87[ASN][1000 genomes]
rs73599650	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7982220	0.81[ASN][1000 genomes]
rs7994164	0.85[EUR][1000 genomes]
rs9301722	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9301724	0.94[ASN][1000 genomes]
rs9523281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9523283	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs9523288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9523289	0.83[ASN][1000 genomes]
rs9583905	0.94[ASN][1000 genomes]
rs9589165	0.81[ASN][1000 genomes]
rs9589167	0.94[ASN][1000 genomes]
rs9589168	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2756433	chr13:91841599-91968099	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases
9	esv3508345	chr13:91901051-91905549	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3508344	chr13:91902072-91904375	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv3508346	chr13:91902074-91904387	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv3519308	chr13:91902076-91904416	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3519297	chr13:91902079-91904438	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv3508343	chr13:91902156-91904356	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv3508347	chr13:91902211-91904312	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv3519319	chr13:91902211-91904312	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	nsv976220	chr13:91903076-91913219	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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