Variant report

Variant	rs16947388
Chromosome Location	chr15:93591893-93591894
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93572208..93574371-chr15:93590379..93592416,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12916137	1.00[ASN][1000 genomes]
rs1623	1.00[ASN][1000 genomes]
rs60641649	1.00[ASN][1000 genomes]
rs62043604	1.00[ASN][1000 genomes]
rs8031157	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	esv1815629	chr15:93572782-93596165	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv1045427	chr15:93576982-93598440	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv1054502	chr15:93580672-93611598	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv542472	chr15:93580672-93611598	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv833096	chr15:93584742-93766257	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93574800-93599800	Weak transcription	Psoas Muscle	Psoas
2	chr15:93581600-93603600	Weak transcription	Right Atrium	heart
3	chr15:93585600-93596600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:93585800-93595200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:93586000-93598600	Strong transcription	H9 Cell Line	embryonic stem cell
6	chr15:93586400-93600600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:93587000-93600800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:93587200-93597000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:93587400-93595600	Strong transcription	Fetal Intestine Small	intestine
10	chr15:93587600-93596800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:93587800-93594800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:93588600-93605400	Weak transcription	Colonic Mucosa	Colon
13	chr15:93589400-93592000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:93589600-93592600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93589600-93593800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:93589600-93594000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr15:93589800-93593000	Strong transcription	Ovary	ovary
18	chr15:93589800-93593800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:93589800-93594800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr15:93589800-93595400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:93589800-93602600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr15:93590000-93592000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr15:93590000-93592400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:93590000-93593600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:93590000-93594400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr15:93590000-93599000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:93590000-93600800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:93590000-93601000	Weak transcription	Fetal Kidney	kidney
29	chr15:93590200-93592000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:93590200-93592000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:93590200-93592200	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:93590200-93592400	Enhancers	Primary hematopoietic stem cells	blood
33	chr15:93590200-93592400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:93590200-93592400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:93590200-93592800	Strong transcription	Pancreas	Pancrea
36	chr15:93590200-93593400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:93590200-93598600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:93590200-93598800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr15:93590200-93600800	Weak transcription	Brain Anterior Caudate	brain
40	chr15:93590200-93603600	Weak transcription	Left Ventricle	heart
41	chr15:93590400-93592000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr15:93590400-93592400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:93590400-93592400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr15:93590400-93592600	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr15:93590400-93593800	Weak transcription	Gastric	stomach
46	chr15:93590400-93594600	Weak transcription	Brain Substantia Nigra	brain
47	chr15:93590400-93601600	Weak transcription	Spleen	Spleen
48	chr15:93590400-93601800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:93590400-93604600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:93590600-93592200	Enhancers	Primary monocytes fromperipheralblood	blood

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