Variant report

Variant	rs16947652
Chromosome Location	chr12:117940776-117940777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11068519	0.82[AFR][1000 genomes]
rs11068609	1.00[EUR][1000 genomes]
rs56165840	1.00[EUR][1000 genomes]
rs60759188	1.00[EUR][1000 genomes]
rs7308761	1.00[EUR][1000 genomes]
rs7309935	1.00[EUR][1000 genomes]
rs73405380	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1045538	chr12:117929400-117963331	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117935400-117941400	Enhancers	Liver	Liver
2	chr12:117938400-117941000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:117938600-117940800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:117939200-117940800	Enhancers	Psoas Muscle	Psoas
5	chr12:117939600-117942800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:117939800-117941000	Enhancers	Aorta	Aorta
7	chr12:117939800-117951200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:117940200-117945200	Weak transcription	Fetal Lung	lung
9	chr12:117940200-117945200	Weak transcription	Gastric	stomach
10	chr12:117940200-117945200	Weak transcription	Pancreas	Pancrea
11	chr12:117940200-117978600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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