Variant report

Variant	rs16948070
Chromosome Location	chr18:28027026-28027027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10502543	0.89[EUR][1000 genomes]
rs11083398	0.89[EUR][1000 genomes]
rs12454095	0.89[EUR][1000 genomes]
rs12454844	0.89[EUR][1000 genomes]
rs12456363	0.89[EUR][1000 genomes]
rs12458614	0.89[EUR][1000 genomes]
rs12605225	0.89[EUR][1000 genomes]
rs12605808	0.89[EUR][1000 genomes]
rs12607492	0.89[EUR][1000 genomes]
rs1442983	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17744085	0.98[EUR][1000 genomes]
rs17744448	0.98[EUR][1000 genomes]
rs17822442	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1899536	0.80[AMR][1000 genomes]
rs4101121	0.80[AMR][1000 genomes]
rs5016095	0.89[EUR][1000 genomes]
rs56080021	0.98[EUR][1000 genomes]
rs57311244	0.89[EUR][1000 genomes]
rs59495821	0.89[EUR][1000 genomes]
rs59606645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61033652	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61391012	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62079990	0.89[EUR][1000 genomes]
rs62080018	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62080022	0.88[EUR][1000 genomes]
rs62080023	0.89[EUR][1000 genomes]
rs62080024	0.89[EUR][1000 genomes]
rs62080025	0.97[EUR][1000 genomes]
rs62080026	0.89[EUR][1000 genomes]
rs62080027	0.89[EUR][1000 genomes]
rs62080028	0.95[EUR][1000 genomes]
rs62080029	0.89[EUR][1000 genomes]
rs62080030	0.89[EUR][1000 genomes]
rs7228882	0.89[EUR][1000 genomes]
rs7239122	0.89[EUR][1000 genomes]
rs7239442	0.89[EUR][1000 genomes]
rs7240469	0.89[EUR][1000 genomes]
rs7240962	0.89[EUR][1000 genomes]
rs7245247	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7245254	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv34009	chr18:27957966-28115014	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909508	chr18:27986202-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv909509	chr18:27986202-28054261	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv909510	chr18:27987508-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv576628	chr18:28005959-28063269	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv2242	chr18:28014039-28059387	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv909511	chr18:28019208-28049708	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3387667	chr18:28026154-28030152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28026800-28027600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:28026800-28027800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr18:28026800-28027800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:28026800-28028200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links