Variant report

Variant	rs169494
Chromosome Location	chr6:32097876-32097877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:339)
CpG islands
(count:244)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:339 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:32097805-32098354	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr6:32097851-32098040	A549	lung:	n/a	n/a
3	SP1	chr6:32097656-32098441	HepG2	liver:	n/a	chr6:32098019-32098033 chr6:32098105-32098126 chr6:32098016-32098025 chr6:32098012-32098026 chr6:32098015-32098027 chr6:32098025-32098039
4	TAF1	chr6:32097770-32098390	PFSK-1	brain:	n/a	n/a
5	CREB1	chr6:32097349-32098559	HepG2	liver:	n/a	n/a
6	ELK1	chr6:32097730-32098345	Hela-S3	cervix:	n/a	n/a
7	BCLAF1	chr6:32097679-32098273	GM12878	blood:	n/a	n/a
8	GTF2F1	chr6:32097592-32098378	Hela-S3	cervix:	n/a	n/a
9	SP2	chr6:32097871-32098403	HepG2	liver:	n/a	chr6:32098115-32098130
10	SP2	chr6:32097865-32098334	H1-hESC	embryonic stem cell:	n/a	chr6:32098115-32098130
11	TBL1XR1	chr6:32097668-32098657	K562	blood:	n/a	n/a
12	GTF3C2	chr6:32097810-32099809	K562	blood:	n/a	n/a
13	PML	chr6:32097421-32098523	GM12878	blood:	n/a	n/a
14	GABPA	chr6:32097726-32098487	SK-N-SH	brain:	n/a	n/a
15	MAX	chr6:32097489-32098378	K562	blood:	n/a	chr6:32097976-32097985
16	YY1	chr6:32097671-32097998	SK-N-SH_RA	brain:	n/a	chr6:32097983-32097997
17	CREB1	chr6:32097707-32098383	ECC-1	luminal epithelium:	n/a	n/a
18	CREB1	chr6:32097621-32098489	GM12878	blood:	n/a	n/a
19	ELF1	chr6:32097579-32098450	GM12878	blood:	n/a	n/a
20	GABPA	chr6:32097816-32098327	GM12878	blood:	n/a	n/a
21	TAF1	chr6:32097735-32098012	K562	blood:	n/a	n/a
22	POLR2A	chr6:32097742-32098465	MCF-7	breast:	n/a	n/a
23	TAF1	chr6:32097807-32097980	Hela-S3	cervix:	n/a	n/a
24	ZBTB33	chr6:32097548-32098441	SK-N-SH	brain:	n/a	n/a
25	E2F6	chr6:32097750-32098478	A549	lung:	n/a	chr6:32098241-32098251 chr6:32098242-32098250 chr6:32098242-32098250 chr6:32098241-32098252 chr6:32098106-32098115 chr6:32098242-32098249 chr6:32098016-32098025
26	TEAD4	chr6:32097595-32098451	HepG2	liver:	n/a	n/a
27	POLR2A	chr6:32097769-32098826	K562	blood:	n/a	n/a
28	GABPA	chr6:32097761-32098485	K562	blood:	n/a	n/a
29	GABPA	chr6:32097771-32098383	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr6:32097668-32098477	Hela-S3	cervix:	n/a	n/a
31	ZBTB33	chr6:32097828-32098232	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:32097755-32098163	ECC-1	luminal epithelium:	n/a	n/a
33	MAX	chr6:32097680-32098874	K562	blood:	n/a	chr6:32097976-32097985
34	POLR2A	chr6:32097844-32098059	HepG2	liver:	n/a	n/a
35	POLR2A	chr6:32097753-32098441	ECC-1	luminal epithelium:	n/a	n/a
36	CREB1	chr6:32097680-32098480	K562	blood:	n/a	n/a
37	MTA3	chr6:32097447-32098558	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:32097840-32097924	GM12878	blood:	n/a	n/a
39	POLR2A	chr6:32097858-32098037	A549	lung:	n/a	n/a
40	POLR2A	chr6:32097765-32098411	MCF-7	breast:	n/a	n/a
41	MYC	chr6:32097614-32098400	NB4	blood:	n/a	chr6:32097976-32097985
42	TRIM28	chr6:32097614-32098608	K562	blood:	n/a	n/a
43	ZMIZ1	chr6:32097405-32098486	K562	blood:	n/a	n/a
44	GABPA	chr6:32097687-32098432	HL-60	blood:	n/a	n/a
45	STAT1	chr6:32097822-32098354	GM12878	blood:	n/a	chr6:32098121-32098129 chr6:32098096-32098104
46	RCOR1	chr6:32097246-32098379	Hela-S3	cervix:	n/a	n/a
47	YY1	chr6:32097619-32098451	SK-N-SH_RA	brain:	n/a	chr6:32097983-32097997
48	ZKSCAN1	chr6:32097791-32098377	Hela-S3	cervix:	n/a	n/a
49	ZNF143	chr6:32097575-32098295	Hela-S3	cervix:	n/a	chr6:32098008-32098026
50	ZBTB33	chr6:32097645-32098359	HCT-116	colon:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32097857-32097907	Jurkat	blood:	n/a
2	chr6:32097834-32097884	K562	blood:	n/a
3	chr6:32097853-32097903	AG04450	lung:	fetal
4	chr6:32097836-32097886	HRCEpiC	kidney:	n/a
5	chr6:32097857-32097907	SK-N-SH	brain:	n/a
6	chr6:32097836-32097886	CMK	blood:	n/a
7	chr6:32097834-32097884	MCF10A-Er-Src	breast:	n/a
8	chr6:32097836-32097886	AG04450	lung:	fetal
9	chr6:32097853-32097903	CMK	blood:	n/a
10	chr6:32097836-32097886	NH-A	brain:	n/a
11	chr6:32097834-32097884	GM12878	blood:	n/a
12	chr6:32097834-32097884	HEEpiC	esophagus:	n/a
13	chr6:32097857-32097907	HIPEpiC	eye:	n/a
14	chr6:32097834-32097884	HCT-116	colon:	n/a
15	chr6:32097857-32097907	T-47D	breast:	n/a
16	chr6:32097836-32097886	HUVEC	blood vessel:	n/a
17	chr6:32097857-32097907	GM12892	blood:	n/a
18	chr6:32097834-32097884	GM06990	blood:	n/a
19	chr6:32097857-32097907	SAEC	small airway:	n/a
20	chr6:32097836-32097886	A549	lung:	n/a
21	chr6:32097853-32097903	HCM	heart:	n/a
22	chr6:32097834-32097884	HL-60	blood:	n/a
23	chr6:32097857-32097907	HMEC	breast:	n/a
24	chr6:32097853-32097903	NT2-D1	testis:	n/a
25	chr6:32097853-32097903	GM12878	blood:	n/a
26	chr6:32097834-32097884	HIPEpiC	eye:	n/a
27	chr6:32097857-32097907	H1-hESC	embryonic stem cell:	embryo
28	chr6:32097834-32097884	HAEpiC	amniotic membrane:	n/a
29	chr6:32097836-32097886	ECC-1	luminal epithelium:	n/a
30	chr6:32097834-32097884	HRPEpiC	eye:	n/a
31	chr6:32097834-32097884	PFSK-1	brain:	n/a
32	chr6:32097834-32097884	GM12892	blood:	n/a
33	chr6:32097853-32097903	GM06990	blood:	n/a
34	chr6:32097853-32097903	U87	brain:	n/a
35	chr6:32097857-32097907	A549	lung:	n/a
36	chr6:32097834-32097884	AG04449	skin:	fetal
37	chr6:32097857-32097907	MCF10A-Er-Src	breast:	n/a
38	chr6:32097853-32097903	BE2_C	brain:	n/a
39	chr6:32097834-32097884	RPTEC	kidney:	n/a
40	chr6:32097857-32097907	AoSMC	blood vessel:	n/a
41	chr6:32097834-32097884	HRCEpiC	kidney:	n/a
42	chr6:32097836-32097886	HCPEpiC	choroid plexus:	n/a
43	chr6:32097857-32097907	BJ	skin:	n/a
44	chr6:32097853-32097903	AG09319	gingival:	n/a
45	chr6:32097834-32097884	HUVEC	blood vessel:	n/a
46	chr6:32097853-32097903	H1-hESC	embryonic stem cell:	embryo
47	chr6:32097853-32097903	ECC-1	luminal epithelium:	n/a
48	chr6:32097853-32097903	NHBE	bronchial:	n/a
49	chr6:32097834-32097884	HCM	heart:	n/a
50	chr6:32097857-32097907	HUVEC	blood vessel:	n/a

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32092992..32099796-chr6:32141629..32147303,15	K562	blood:
2	chr6:32092075..32095723-chr6:32095915..32099377,5	K562	blood:
3	chr6:32097633..32099354-chr6:32132792..32134647,2	MCF-7	breast:
4	chr6:32093127..32099788-chr6:32117635..32125818,23	K562	blood:
5	chr6:32093775..32101330-chr6:32116233..32126080,28	K562	blood:
6	chr6:32096172..32100215-chr6:32154777..32158553,5	K562	blood:
7	chr6:32084412..32089013-chr6:32094297..32098521,8	MCF-7	breast:
8	chr6:32096229..32099751-chr6:32142407..32148684,10	K562	blood:
9	chr6:32095298..32098184-chr6:32156498..32160888,5	K562	blood:
10	chr6:32092991..32098157-chr6:32120638..32123369,8	MCF-7	breast:
11	chr6:32093545..32101236-chr6:32120105..32124952,17	MCF-7	breast:
12	chr6:32096431..32099984-chr6:32142713..32147644,5	MCF-7	breast:
13	chr6:32094644..32097933-chr6:32160950..32166107,5	MCF-7	breast:
14	chr6:31627130..31628975-chr6:32096561..32099431,2	K562	blood:
15	chr6:32095710..32098039-chr6:32149895..32151933,3	MCF-7	breast:
16	chr6:31842997..31845464-chr6:32096305..32098060,2	MCF-7	breast:
17	chr6:32094074..32100900-chr6:32161398..32167888,13	K562	blood:
18	chr6:32093794..32098047-chr6:32142723..32149394,11	MCF-7	breast:
19	chr6:32095438..32099354-chr6:32131775..32137451,7	K562	blood:
20	chr6:32092056..32098268-chr6:32161262..32166055,9	MCF-7	breast:
21	chr6:31508386..31510621-chr6:32096687..32099353,2	K562	blood:
22	chr6:32093849..32103011-chr6:32158588..32167888,20	K562	blood:

No data

Variant related genes	Relation type
ATF6B	TF binding region
ATF6B	CpG island
ENSG00000204439	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204305	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000241404	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000204308	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204304	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000198563	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12333245	0.93[ASN][1000 genomes]
rs169496	0.93[ASN][1000 genomes]
rs204877	0.89[ASN][1000 genomes]
rs204888	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs204896	0.93[ASN][1000 genomes]
rs204897	0.93[ASN][1000 genomes]
rs204899	0.83[ASN][1000 genomes]
rs204900	0.93[ASN][1000 genomes]
rs2072628	0.93[ASN][1000 genomes]
rs2239690	0.93[ASN][1000 genomes]
rs2269429	0.93[ASN][1000 genomes]
rs35066946	0.93[ASN][1000 genomes]
rs3749962	0.93[ASN][1000 genomes]
rs411337	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs439844	0.89[ASN][1000 genomes]
rs55740958	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71565309	0.89[AMR][1000 genomes]
rs9469077	0.89[ASN][1000 genomes]
rs9469080	0.93[ASN][1000 genomes]
rs9469081	0.91[ASN][1000 genomes]
rs9469084	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv1028506	chr6:32073612-32107531	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
37	nsv884701	chr6:32089549-32130329	Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
38	nsv884702	chr6:32094312-32108367	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32094800-32098800	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:32095200-32098800	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:32096200-32098000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:32096600-32098800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:32096800-32098800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:32096800-32099000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:32097000-32098000	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr6:32097000-32098600	Active TSS	K562	blood
9	chr6:32097000-32098800	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:32097000-32098800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:32097200-32098600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr6:32097200-32098600	Active TSS	Gastric	stomach
13	chr6:32097200-32098800	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:32097200-32098800	Active TSS	Psoas Muscle	Psoas
15	chr6:32097200-32099200	Active TSS	H1 Cell Line	embryonic stem cell
16	chr6:32097200-32099200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr6:32097400-32098000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:32097400-32098400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:32097400-32098400	Active TSS	Aorta	Aorta
20	chr6:32097400-32098600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:32097400-32098600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:32097400-32098600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:32097400-32098600	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr6:32097400-32098600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:32097400-32098600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:32097400-32098600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:32097400-32098600	Active TSS	Esophagus	oesophagus
28	chr6:32097400-32098600	Active TSS	Ovary	ovary
29	chr6:32097400-32098800	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr6:32097400-32098800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:32097400-32098800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr6:32097400-32098800	Active TSS	Pancreas	Pancrea
33	chr6:32097400-32098800	Active TSS	Small Intestine	intestine
34	chr6:32097400-32098800	Bivalent/Poised TSS	HepG2	liver
35	chr6:32097400-32099000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:32097400-32099000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:32097400-32099000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:32097400-32099000	Active TSS	A549	lung
39	chr6:32097400-32099200	Active TSS	H9 Cell Line	embryonic stem cell
40	chr6:32097600-32098200	Active TSS	Fetal Muscle Trunk	muscle
41	chr6:32097600-32098400	Active TSS	Fetal Heart	heart
42	chr6:32097600-32098400	Active TSS	Lung	lung
43	chr6:32097600-32098400	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr6:32097600-32098400	Active TSS	Stomach Mucosa	stomach
45	chr6:32097600-32098400	Active TSS	Dnd41	blood
46	chr6:32097600-32098400	Active TSS	NHDF-Ad	bronchial
47	chr6:32097600-32098600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:32097600-32098600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:32097600-32098600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:32097600-32098600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links