Variant report

Variant	rs16949623
Chromosome Location	chr18:44572437-44572438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11872317	1.00[ASN][1000 genomes]
rs11872376	1.00[ASN][1000 genomes]
rs11872476	1.00[ASN][1000 genomes]
rs11873793	1.00[ASN][1000 genomes]
rs11874218	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11874267	1.00[CHB][hapmap]
rs11874300	1.00[ASN][1000 genomes]
rs11874423	1.00[CHB][hapmap]
rs11874582	1.00[CHB][hapmap]
rs11874634	1.00[CHB][hapmap]
rs11875032	1.00[ASN][1000 genomes]
rs11875527	1.00[ASN][1000 genomes]
rs11875703	1.00[CHB][hapmap]
rs11875918	1.00[CHB][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs11876274	1.00[CHB][hapmap]
rs11876752	1.00[ASN][1000 genomes]
rs11877373	1.00[CHB][hapmap]
rs11877429	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11877540	1.00[ASN][1000 genomes]
rs11877721	1.00[CHB][hapmap]
rs11877963	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11878114	1.00[CHB][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs11878135	1.00[ASN][1000 genomes]
rs55752024	1.00[ASN][1000 genomes]
rs55890037	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56030315	1.00[ASN][1000 genomes]
rs56055727	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146866	1.00[ASN][1000 genomes]
rs56202233	1.00[ASN][1000 genomes]
rs56333835	1.00[ASN][1000 genomes]
rs56388142	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56400973	1.00[ASN][1000 genomes]
rs7229231	1.00[CHB][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs7236403	1.00[CHB][hapmap]
rs7238877	1.00[CHB][hapmap]
rs7240843	1.00[CHB][hapmap]
rs7240909	1.00[CHB][hapmap]
rs7241858	1.00[CHB][hapmap]
rs7243309	1.00[CHB][hapmap]
rs72903209	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903212	1.00[ASN][1000 genomes]
rs72903231	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903232	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903376	1.00[ASN][1000 genomes]
rs72903390	1.00[ASN][1000 genomes]
rs72903401	1.00[ASN][1000 genomes]
rs72905209	1.00[ASN][1000 genomes]
rs72905249	1.00[ASN][1000 genomes]
rs72905251	1.00[ASN][1000 genomes]
rs72905265	1.00[ASN][1000 genomes]
rs72905274	1.00[ASN][1000 genomes]
rs72905289	1.00[ASN][1000 genomes]
rs72905292	1.00[ASN][1000 genomes]
rs72907114	1.00[ASN][1000 genomes]
rs72907118	1.00[ASN][1000 genomes]
rs72907130	1.00[ASN][1000 genomes]
rs72907134	1.00[ASN][1000 genomes]
rs72907154	1.00[ASN][1000 genomes]
rs72907155	1.00[ASN][1000 genomes]
rs72907196	1.00[ASN][1000 genomes]
rs72909171	1.00[ASN][1000 genomes]
rs72909189	1.00[ASN][1000 genomes]
rs72909195	1.00[ASN][1000 genomes]
rs72909201	1.00[ASN][1000 genomes]
rs72911111	1.00[ASN][1000 genomes]
rs72911118	1.00[ASN][1000 genomes]
rs72913063	1.00[ASN][1000 genomes]
rs72915084	1.00[ASN][1000 genomes]
rs72917125	1.00[ASN][1000 genomes]
rs72917151	1.00[ASN][1000 genomes]
rs72919213	1.00[ASN][1000 genomes]
rs72919298	1.00[ASN][1000 genomes]
rs72921352	1.00[ASN][1000 genomes]
rs72921363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921366	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8088346	1.00[CHB][hapmap]
rs8092148	1.00[CHB][hapmap]
rs8094449	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1056744	chr18:44509052-44581752	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv909609	chr18:44513071-44597092	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv1805582	chr18:44542384-44577288	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv2282	chr18:44547638-44590333	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv909610	chr18:44549455-44602249	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv833640	chr18:44552276-44714872	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv909611	chr18:44560875-44614090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv909612	chr18:44560875-44681485	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1057235	chr18:44564162-44595809	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1067278	chr18:44564162-44629283	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links