Variant report

Variant	rs16950278
Chromosome Location	chr13:95533306-95533307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16950275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73547625	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73547627	0.91[ASN][1000 genomes]
rs73547635	0.91[ASN][1000 genomes]
rs73547639	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73547640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547642	1.00[ASN][1000 genomes]
rs73547646	1.00[ASN][1000 genomes]
rs9524660	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832687	chr13:95412811-95582161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95532600-95534000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:95532800-95533800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:95532800-95534000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:95533200-95533600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:95533200-95533800	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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