Variant report

Variant	rs16950726
Chromosome Location	chr16:79614082-79614083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79607458..79610487-chr16:79611792..79614934,3	K562	blood:
2	chr16:79601059..79603944-chr16:79613532..79615419,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11645511	0.95[EUR][1000 genomes]
rs30387	0.98[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv457554	chr16:79608408-79645989	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv573289	chr16:79608408-79645989	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16950726	VAT1L	cis	parietal	SCAN
rs16950726	HSD17B2	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79606600-79623000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr16:79612600-79615800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr16:79612600-79617000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr16:79612600-79617400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr16:79612800-79614800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr16:79612800-79615800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr16:79612800-79616600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:79612800-79616800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr16:79613000-79614600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr16:79613200-79615800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:79613400-79614600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr16:79613600-79614600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr16:79613800-79615000	Enhancers	Fetal Kidney	kidney
14	chr16:79614000-79614400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr16:79614000-79614400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr16:79614000-79614600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:79614000-79614600	Enhancers	Ovary	ovary
18	chr16:79614000-79615400	Enhancers	Fetal Lung	lung
19	chr16:79614000-79615800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:79614000-79615800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:79614000-79616000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links