Variant report

Variant	rs16950827
Chromosome Location	chr16:79651518-79651519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57551017	1.00[AMR][1000 genomes]
rs59373687	1.00[AMR][1000 genomes]
rs60475531	1.00[AMR][1000 genomes]
rs73585188	1.00[AMR][1000 genomes]
rs73585202	1.00[AMR][1000 genomes]
rs73587031	1.00[AMR][1000 genomes]
rs73587036	1.00[AMR][1000 genomes]
rs73587039	1.00[AMR][1000 genomes]
rs73587045	1.00[AMR][1000 genomes]
rs73587049	1.00[AMR][1000 genomes]
rs73587050	1.00[AMR][1000 genomes]
rs73587057	1.00[AMR][1000 genomes]
rs73587060	1.00[AMR][1000 genomes]
rs73587063	1.00[AMR][1000 genomes]
rs9923729	1.00[AMR][1000 genomes]
rs9923828	1.00[AMR][1000 genomes]
rs9924632	1.00[AMR][1000 genomes]
rs9937152	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79635600-79652400	Weak transcription	Spleen	Spleen
2	chr16:79636200-79653800	Weak transcription	Right Atrium	heart
3	chr16:79642200-79651800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr16:79645000-79652400	Weak transcription	Fetal Muscle Leg	muscle
5	chr16:79645200-79652400	Weak transcription	Placenta	Placenta
6	chr16:79647400-79652200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:79647400-79652200	Weak transcription	HSMMtube	muscle
8	chr16:79649000-79652200	Weak transcription	HMEC	breast
9	chr16:79650600-79653400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr16:79650800-79652400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:79650800-79652800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:79650800-79653400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr16:79651000-79651800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr16:79651000-79652200	Enhancers	Adipose Nuclei	Adipose
15	chr16:79651000-79652800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr16:79651000-79653600	Enhancers	Dnd41	blood
17	chr16:79651200-79652600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:79651200-79652800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr16:79651200-79653400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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