Variant report

Variant	rs16951122
Chromosome Location	chr16:79748196-79748197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs62043300	0.84[EUR][1000 genomes]
rs62043302	0.84[EUR][1000 genomes]
rs62043303	0.84[EUR][1000 genomes]
rs62043304	0.84[EUR][1000 genomes]
rs62043305	0.84[EUR][1000 genomes]
rs62043308	0.84[EUR][1000 genomes]
rs62043309	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62043310	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62043311	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043312	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043315	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043316	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043317	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62043319	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62043337	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62043338	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79742000-79749400	Weak transcription	Pancreas	Pancrea
2	chr16:79742400-79748600	Weak transcription	Stomach Mucosa	stomach
3	chr16:79742400-79749400	Weak transcription	Aorta	Aorta
4	chr16:79746200-79749800	Enhancers	Duodenum Mucosa	Duodenum
5	chr16:79746400-79748400	Weak transcription	Liver	Liver
6	chr16:79746800-79749000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:79746800-79751600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:79747000-79748400	Weak transcription	Fetal Intestine Large	intestine
9	chr16:79747000-79748400	Weak transcription	Fetal Lung	lung
10	chr16:79747000-79750600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr16:79747000-79751800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr16:79747800-79749000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:79747800-79750800	Enhancers	Ovary	ovary
14	chr16:79748000-79748200	Weak transcription	Fetal Intestine Small	intestine
15	chr16:79748000-79750000	Enhancers	Fetal Kidney	kidney
16	chr16:79748000-79756200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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