Variant report

Variant	rs16951505
Chromosome Location	chr16:79878570-79878571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12446826	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13330532	0.84[ASN][1000 genomes]
rs7190987	0.89[ASN][1000 genomes]
rs7198914	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79874000-79880600	Weak transcription	Right Atrium	heart
2	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
3	chr16:79876400-79880200	Flanking Active TSS	K562	blood
4	chr16:79876800-79879200	Enhancers	Fetal Stomach	stomach
5	chr16:79877400-79878800	Enhancers	Fetal Thymus	thymus
6	chr16:79877800-79878600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:79878000-79878600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:79878000-79878800	Enhancers	Thymus	Thymus
9	chr16:79878000-79881200	Weak transcription	Pancreas	Pancrea
10	chr16:79878200-79880800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:79878200-79881000	Enhancers	Primary hematopoietic stem cells	blood
12	chr16:79878400-79879400	Enhancers	Esophagus	oesophagus
13	chr16:79878400-79880000	Flanking Active TSS	GM12878-XiMat	blood
14	chr16:79878400-79880200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr16:79878400-79880200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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