Variant report

Variant	rs16951851
Chromosome Location	chr16:80006611-80006612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16951747	1.00[AMR][1000 genomes]
rs16951756	1.00[AMR][1000 genomes]
rs16951900	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16951905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16951936	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4433822	1.00[AMR][1000 genomes]
rs55964243	1.00[AMR][1000 genomes]
rs58463189	1.00[AMR][1000 genomes]
rs8047520	1.00[AMR][1000 genomes]
rs8051245	1.00[AMR][1000 genomes]
rs8052968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80005800-80006800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr16:80006400-80015000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:80006600-80008400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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