Variant report

Variant	rs16952220
Chromosome Location	chr16:80099200-80099201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16952225	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952313	1.00[AMR][1000 genomes]
rs16952332	1.00[AMR][1000 genomes]
rs16952513	1.00[AMR][1000 genomes]
rs2169808	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80095800-80099200	Enhancers	Fetal Stomach	stomach
2	chr16:80097800-80099600	Enhancers	Fetal Lung	lung
3	chr16:80098400-80099400	Weak transcription	Small Intestine	intestine
4	chr16:80099000-80099800	Enhancers	HMEC	breast
5	chr16:80099200-80099600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr16:80099200-80099600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:80099200-80099800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr16:80099200-80099800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:80099200-80100600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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