Variant report

Variant	rs16952556
Chromosome Location	chr18:7812138-7812139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16952548	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952554	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73393543	1.00[EUR][1000 genomes]
rs8083032	1.00[EUR][1000 genomes]
rs8091188	1.00[EUR][1000 genomes]
rs8095831	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs894073	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv576425	chr18:7747873-7859757	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1062454	chr18:7784432-7838015	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7767200-7812400	Weak transcription	Pancreas	Pancrea
2	chr18:7790600-7813400	Weak transcription	Fetal Thymus	thymus
3	chr18:7800200-7812200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr18:7800600-7813400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:7806600-7813400	Enhancers	Fetal Heart	heart
6	chr18:7807800-7814000	Weak transcription	Fetal Stomach	stomach
7	chr18:7808400-7813200	Weak transcription	Fetal Lung	lung
8	chr18:7808600-7812200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr18:7808800-7812600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:7809200-7812600	Weak transcription	Brain Anterior Caudate	brain
11	chr18:7809200-7813200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr18:7809400-7813000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:7809600-7812800	Weak transcription	Lung	lung
14	chr18:7809600-7813400	Weak transcription	Thymus	Thymus
15	chr18:7810200-7817600	Weak transcription	Ovary	ovary
16	chr18:7810200-7822400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr18:7810200-7824200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr18:7810800-7813600	Enhancers	Left Ventricle	heart
19	chr18:7810800-7813800	Enhancers	Psoas Muscle	Psoas
20	chr18:7811000-7812800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr18:7811000-7812800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr18:7811000-7813400	Enhancers	Adipose Nuclei	Adipose
23	chr18:7811000-7813600	Enhancers	Right Ventricle	heart
24	chr18:7811200-7813000	Enhancers	Right Atrium	heart
25	chr18:7811200-7813200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr18:7811200-7813200	Enhancers	Aorta	Aorta
27	chr18:7811200-7813200	Enhancers	Stomach Smooth Muscle	stomach
28	chr18:7811200-7813400	Enhancers	A549	lung
29	chr18:7811400-7812600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr18:7811400-7812600	Enhancers	Colon Smooth Muscle	Colon
31	chr18:7811400-7814200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr18:7811600-7813000	Enhancers	Fetal Muscle Leg	muscle
33	chr18:7811600-7813200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr18:7811600-7813200	Enhancers	NHLF	lung
35	chr18:7811600-7813400	Enhancers	HepG2	liver
36	chr18:7811600-7813400	Enhancers	NHDF-Ad	bronchial
37	chr18:7811800-7812200	Enhancers	Osteobl	bone
38	chr18:7811800-7812800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr18:7811800-7812800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr18:7811800-7812800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr18:7811800-7813000	Enhancers	Hela-S3	cervix
42	chr18:7811800-7813200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr18:7812000-7812800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr18:7812000-7813000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr18:7812000-7813200	Enhancers	NHEK	skin
46	chr18:7812000-7813400	Enhancers	Muscle Satellite Cultured Cells	--

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