Variant report

Variant	rs16952952
Chromosome Location	chr18:8155840-8155841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11874504	1.00[EUR][1000 genomes]
rs2017321	0.95[AFR][1000 genomes]
rs2058469	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2058470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2080108	0.86[AFR][1000 genomes]
rs2098265	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4121769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs521237	1.00[EUR][1000 genomes]
rs552322	0.87[EUR][1000 genomes]
rs626707	1.00[EUR][1000 genomes]
rs722021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs722022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7230799	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236897	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389728	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389732	1.00[EUR][1000 genomes]
rs73389739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389747	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389751	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389753	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73389768	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs741110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8122400-8157400	Weak transcription	Aorta	Aorta
2	chr18:8122400-8160400	Weak transcription	Thymus	Thymus
3	chr18:8139000-8158800	Weak transcription	Pancreas	Pancrea
4	chr18:8141600-8159200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr18:8142200-8156000	Weak transcription	HepG2	liver
6	chr18:8142400-8157800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr18:8142600-8160200	Weak transcription	Psoas Muscle	Psoas
8	chr18:8142600-8162400	Weak transcription	Right Ventricle	heart
9	chr18:8145000-8157800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr18:8145800-8157800	Weak transcription	Adipose Nuclei	Adipose
11	chr18:8146200-8162600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:8147400-8159400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr18:8149200-8157600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:8149400-8157800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr18:8151800-8157800	Weak transcription	Fetal Stomach	stomach
16	chr18:8152000-8167200	Weak transcription	Gastric	stomach
17	chr18:8154200-8161000	Weak transcription	NH-A	brain
18	chr18:8154200-8162600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr18:8154400-8157400	Weak transcription	A549	lung
20	chr18:8154400-8158000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr18:8154600-8156600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr18:8154600-8156600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr18:8154600-8157000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr18:8154600-8157200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:8154600-8158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr18:8154600-8158600	Weak transcription	Left Ventricle	heart
27	chr18:8154600-8160600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr18:8154600-8163000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr18:8154800-8158400	Weak transcription	HSMMtube	muscle
30	chr18:8154800-8158600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr18:8154800-8160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:8154800-8161800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr18:8155200-8162600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr18:8155800-8156000	Enhancers	Fetal Lung	lung

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