Variant report

Variant	rs16953787
Chromosome Location	chr16:80700907-80700908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NANOG	chr16:80700633-80701007	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000265341	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16953810	1.00[AMR][1000 genomes]
rs16953819	1.00[AMR][1000 genomes]
rs16953834	1.00[AMR][1000 genomes]
rs41318649	1.00[AMR][1000 genomes]
rs41327346	1.00[AMR][1000 genomes]
rs41469644	1.00[AMR][1000 genomes]
rs6564788	1.00[AMR][1000 genomes]
rs7185866	1.00[AMR][1000 genomes]
rs7191319	1.00[AMR][1000 genomes]
rs7200510	1.00[AMR][1000 genomes]
rs7201943	1.00[AMR][1000 genomes]
rs7202972	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv1815070	chr16:80697870-80725811	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
2	chr16:80687000-80716200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80689000-80751000	Weak transcription	Pancreas	Pancrea
4	chr16:80690600-80728000	Weak transcription	Gastric	stomach
5	chr16:80690800-80703200	Weak transcription	Esophagus	oesophagus
6	chr16:80691000-80704400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:80695600-80703200	Weak transcription	Lung	lung
8	chr16:80696600-80705200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:80698800-80703400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr16:80699400-80723000	Weak transcription	HUVEC	blood vessel
11	chr16:80699800-80701200	Weak transcription	Hela-S3	cervix
12	chr16:80699800-80701400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr16:80700000-80701400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:80700200-80701400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:80700400-80701200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:80700400-80701400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:80700400-80701400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr16:80700400-80701400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr16:80700400-80701600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr16:80700400-80702200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr16:80700600-80701200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr16:80700600-80701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr16:80700800-80701000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr16:80700800-80701200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr16:80700800-80701200	Enhancers	Adipose Nuclei	Adipose
26	chr16:80700800-80701600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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