Variant report

Variant	rs16955031
Chromosome Location	chr16:81359467-81359468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81307371..81310396-chr16:81356696..81360378,4	MCF-7	breast:
2	chr16:81357398..81359804-chr16:81378365..81379960,2	MCF-7	breast:
3	chr16:81358702..81362075-chr16:81365943..81367712,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1075352	0.93[AMR][1000 genomes]
rs1075353	1.00[CEU][hapmap];0.83[TSI][hapmap];0.93[AMR][1000 genomes]
rs11150385	1.00[MEX][hapmap]
rs11643220	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11861054	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11861072	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11861112	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11861158	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11861322	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11861886	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11862082	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11862778	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes]
rs11862805	1.00[CEU][hapmap];0.94[AMR][1000 genomes]
rs11866294	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11866308	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11866327	1.00[AMR][1000 genomes]
rs11866374	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11866407	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11866408	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11866700	1.00[AMR][1000 genomes]
rs16955014	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16955018	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16955027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16955059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16955067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16955071	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16955074	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16955083	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16955109	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16955113	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16955120	0.82[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16955138	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16955149	0.82[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes]
rs16955164	1.00[AMR][1000 genomes]
rs16955173	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs16955203	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs16955210	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs2059281	0.82[CHB][hapmap]
rs2317129	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28560203	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28561847	0.87[AMR][1000 genomes]
rs28864156	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34684636	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3803653	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56859781	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57928297	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58590084	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58594614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59579335	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59586584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203686	1.00[MEX][hapmap]
rs9925624	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9935105	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
5	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
6	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
7	nsv524477	chr16:81359467-81362134	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv524464	chr16:81359467-81365974	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81349800-81365800	Weak transcription	Aorta	Aorta
2	chr16:81350000-81361400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:81350000-81361600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr16:81350000-81364800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr16:81350000-81365800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:81350000-81371200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:81350000-81372000	Weak transcription	Primary B cells from cord blood	blood
8	chr16:81350000-81373200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr16:81350000-81375000	Weak transcription	Fetal Intestine Large	intestine
10	chr16:81350400-81367600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr16:81350400-81370400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:81350400-81373200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:81350600-81363000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr16:81350600-81367600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr16:81350600-81372800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81350800-81365800	Weak transcription	Fetal Brain Male	brain
17	chr16:81351200-81369800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr16:81351400-81368800	Weak transcription	Dnd41	blood
19	chr16:81351400-81371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr16:81352600-81362800	Weak transcription	Gastric	stomach
21	chr16:81352800-81366000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr16:81352800-81367400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr16:81353200-81367800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr16:81353400-81373200	Weak transcription	HUVEC	blood vessel
25	chr16:81353400-81390400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:81353600-81366200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:81353800-81372600	Weak transcription	A549	lung
28	chr16:81354000-81360200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:81354000-81360400	Weak transcription	Psoas Muscle	Psoas
30	chr16:81354000-81361800	Weak transcription	HSMMtube	muscle
31	chr16:81354000-81364600	Weak transcription	Small Intestine	intestine
32	chr16:81354000-81371400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr16:81354200-81359600	Weak transcription	NHLF	lung
34	chr16:81354200-81391600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:81354400-81372800	Weak transcription	HSMM	muscle
36	chr16:81354600-81361000	Weak transcription	Stomach Mucosa	stomach
37	chr16:81354600-81361800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr16:81355600-81371600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr16:81355800-81362400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr16:81357400-81359800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr16:81357400-81360800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr16:81357800-81361600	Enhancers	Brain Anterior Caudate	brain
43	chr16:81357800-81375800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr16:81358200-81360400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr16:81358400-81360200	Weak transcription	Primary T cells from cord blood	blood
46	chr16:81358600-81360200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr16:81358600-81360200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:81358600-81360200	Weak transcription	Brain Angular Gyrus	brain
49	chr16:81358600-81360200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr16:81358600-81362800	Weak transcription	Left Ventricle	heart

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