Variant report

Variant	rs16955759
Chromosome Location	chr18:9843038-9843039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9842476..9844258-chr18:9869598..9871321,2	K562	blood:
2	chr18:9841904..9843722-chr18:9913896..9916570,2	MCF-7	breast:
3	chr18:9802052..9805093-chr18:9840296..9843352,4	K562	blood:
4	chr18:9841379..9844189-chr18:9848048..9849668,3	K562	blood:
5	chr18:9842296..9844385-chr18:9844750..9847124,2	K562	blood:
6	chr18:9835909..9838532-chr18:9841261..9843750,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168461	Chromatin interaction
ENSG00000101558	Chromatin interaction
ENSG00000252680	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1065571	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1065575	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11664798	0.91[ASN][1000 genomes]
rs12605010	1.00[YRI][hapmap]
rs17731716	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867813	1.00[CEU][hapmap]
rs56147259	0.93[ASN][1000 genomes]
rs57674192	0.98[ASN][1000 genomes]
rs60181014	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7229089	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9825400-9849800	Weak transcription	Gastric	stomach
2	chr18:9828400-9846000	Weak transcription	Pancreas	Pancrea
3	chr18:9829000-9845200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr18:9829000-9848200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr18:9829600-9846600	Weak transcription	NHDF-Ad	bronchial
6	chr18:9831200-9847200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr18:9831600-9852400	Weak transcription	A549	lung
8	chr18:9831800-9845200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr18:9832400-9846600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr18:9832800-9845000	Weak transcription	Osteobl	bone
11	chr18:9832800-9865000	Weak transcription	Spleen	Spleen
12	chr18:9833000-9846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr18:9834600-9847400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr18:9836200-9846000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:9836200-9846800	Weak transcription	HMEC	breast
16	chr18:9836200-9848200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr18:9836800-9846400	Weak transcription	Fetal Intestine Small	intestine
18	chr18:9836800-9860400	Weak transcription	Brain Hippocampus Middle	brain
19	chr18:9837000-9844200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr18:9837000-9846200	Weak transcription	Fetal Thymus	thymus
21	chr18:9838600-9843600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr18:9838600-9846200	Weak transcription	Aorta	Aorta
23	chr18:9838800-9845600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr18:9839200-9844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr18:9839200-9844800	Enhancers	Fetal Muscle Leg	muscle
26	chr18:9839200-9845200	Weak transcription	NH-A	brain
27	chr18:9839200-9845800	Weak transcription	Placenta	Placenta
28	chr18:9839200-9846800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr18:9839200-9847800	Weak transcription	HSMM	muscle
30	chr18:9839200-9849000	Weak transcription	NHEK	skin
31	chr18:9839200-9854600	Weak transcription	Brain Substantia Nigra	brain
32	chr18:9839400-9845600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr18:9839400-9846000	Weak transcription	Brain Anterior Caudate	brain
34	chr18:9839600-9846200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr18:9839600-9849400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr18:9839800-9846200	Weak transcription	Lung	lung
37	chr18:9839800-9848400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr18:9840200-9843600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:9840200-9844000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr18:9840200-9844200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr18:9840200-9848200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr18:9840200-9849400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr18:9840200-9849400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr18:9840200-9849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr18:9840400-9844200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr18:9840400-9846200	Weak transcription	Fetal Stomach	stomach
47	chr18:9840600-9843600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr18:9840600-9844000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr18:9840600-9846800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr18:9841000-9844200	Weak transcription	Hela-S3	cervix

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