Variant report

Variant	rs16956106
Chromosome Location	chr16:81996009-81996010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11639666	0.86[AMR][1000 genomes]
rs12598147	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16956065	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4640176	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
2	chr16:81982600-82007000	Weak transcription	Gastric	stomach
3	chr16:81990400-81996400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr16:81993400-81997200	Weak transcription	Lung	lung
5	chr16:81993400-81999600	Weak transcription	Liver	Liver
6	chr16:81994400-81996200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:81994800-82000800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr16:81995000-81996600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:81995600-81997200	Weak transcription	GM12878-XiMat	blood
10	chr16:81995600-81997200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr16:81995600-81997600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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