Variant report

Variant	rs16956619
Chromosome Location	chr15:72533738-72533739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72532567..72537112-chr15:72562138..72566165,7	MCF-7	breast:
2	chr15:72527394..72534715-chr15:72562814..72566489,12	MCF-7	breast:
3	chr15:72532349..72534354-chr15:72541777..72543813,2	MCF-7	breast:
4	chr15:72532410..72535079-chr15:72766704..72768581,2	MCF-7	breast:
5	chr15:72530629..72532313-chr15:72532642..72534187,2	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11853063	1.00[AMR][1000 genomes]
rs11854010	1.00[AMR][1000 genomes]
rs11854214	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856302	1.00[AMR][1000 genomes]
rs12440768	1.00[YRI][hapmap]
rs16956476	1.00[AMR][1000 genomes]
rs16956594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
3	chr15:72529200-72536200	Strong transcription	Fetal Stomach	stomach
4	chr15:72530000-72534000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:72530000-72534200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:72530000-72534200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:72530400-72533800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:72530400-72542200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:72530600-72533800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:72530600-72534000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:72530600-72536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:72530600-72542000	Weak transcription	Stomach Mucosa	stomach
14	chr15:72530600-72545600	Weak transcription	Small Intestine	intestine
15	chr15:72530800-72561200	Strong transcription	Adipose Nuclei	Adipose
16	chr15:72531000-72537000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:72531000-72539000	Strong transcription	Placenta	Placenta
18	chr15:72531000-72562400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:72531200-72539000	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
24	chr15:72531400-72537000	Strong transcription	HSMMtube	muscle
25	chr15:72531400-72538600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:72531400-72538800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:72531400-72542000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:72531600-72539800	Strong transcription	Fetal Brain Female	brain
29	chr15:72531800-72561400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr15:72532000-72537000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:72532000-72537000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:72532000-72537200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:72532000-72537400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:72532000-72537400	Strong transcription	Brain Angular Gyrus	brain
35	chr15:72532000-72537400	Strong transcription	Psoas Muscle	Psoas
36	chr15:72532000-72539800	Strong transcription	Primary T cells from cord blood	blood
37	chr15:72532000-72543200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:72532200-72535000	Strong transcription	H9 Cell Line	embryonic stem cell
40	chr15:72532200-72535400	Strong transcription	Fetal Thymus	thymus
41	chr15:72532200-72535600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:72532200-72536400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:72532200-72537000	Strong transcription	Osteobl	bone
44	chr15:72532200-72537200	Strong transcription	Fetal Lung	lung
45	chr15:72532200-72537200	Strong transcription	NH-A	brain
46	chr15:72532200-72538000	Strong transcription	Primary B cells from cord blood	blood
47	chr15:72532200-72538200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr15:72532200-72538200	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:72532200-72538400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:72532200-72538400	Strong transcription	Primary monocytes fromperipheralblood	blood

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