Variant report

Variant	rs16956836
Chromosome Location	chr15:31818959-31818960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11858750	0.87[EUR][1000 genomes]
rs12902788	0.93[EUR][1000 genomes]
rs12913114	0.93[EUR][1000 genomes]
rs16956753	1.00[CEU][hapmap]
rs16956805	0.93[EUR][1000 genomes]
rs16956846	0.93[EUR][1000 genomes]
rs2034996	0.87[EUR][1000 genomes]
rs34480216	0.87[EUR][1000 genomes]
rs34488095	0.93[EUR][1000 genomes]
rs35046617	0.93[EUR][1000 genomes]
rs35692871	0.87[EUR][1000 genomes]
rs66527704	0.87[EUR][1000 genomes]
rs67886525	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7170725	0.93[EUR][1000 genomes]
rs7181223	0.93[EUR][1000 genomes]
rs7496896	1.00[MEX][hapmap]
rs8032199	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033280	0.88[EUR][1000 genomes]
rs877548	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2422205	chr15:31808878-32375021	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2422269	chr15:31808878-32375021	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv2422351	chr15:31808878-32375021	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2422455	chr15:31808878-32375021	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31782400-31821000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:31802600-31825200	Weak transcription	Fetal Brain Female	brain
3	chr15:31808800-31819600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:31810200-31819200	Weak transcription	Spleen	Spleen
5	chr15:31810600-31821200	Weak transcription	Colonic Mucosa	Colon
6	chr15:31811400-31821200	Weak transcription	Pancreas	Pancrea
7	chr15:31813200-31819200	Weak transcription	Left Ventricle	heart
8	chr15:31814400-31819400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:31814400-31820400	Strong transcription	Brain Inferior Temporal Lobe	brain
10	chr15:31814600-31819000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:31814600-31819400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:31814800-31819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:31814800-31819200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:31814800-31819400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:31815200-31823600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:31815600-31821800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:31816000-31823200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:31816400-31823400	Weak transcription	Right Ventricle	heart
19	chr15:31816600-31820200	Strong transcription	Brain Cingulate Gyrus	brain
20	chr15:31817000-31820000	Strong transcription	Brain Substantia Nigra	brain
21	chr15:31817000-31820400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:31817000-31820600	Strong transcription	Brain Angular Gyrus	brain
23	chr15:31817000-31822800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:31817200-31819600	Strong transcription	Brain Anterior Caudate	brain
25	chr15:31817800-31819600	Strong transcription	Brain Hippocampus Middle	brain
26	chr15:31818600-31820400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr15:31818800-31819200	Enhancers	Adipose Nuclei	Adipose
28	chr15:31818800-31820200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:31818800-31821600	Weak transcription	Ovary	ovary

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