Variant report

Variant	rs16957346
Chromosome Location	chr17:46554937-46554938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000206805	TF binding region
ENSG00000108511	Chromatin interaction
ENSG00000264451	Chromatin interaction
ENSG00000266222	Chromatin interaction
ENSG00000120093	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16954581	1.00[JPT][hapmap]
rs16955073	1.00[JPT][hapmap]
rs60321701	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60352246	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46550400-46555200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:46550600-46555800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46550800-46555000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:46550800-46555800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:46550800-46559000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:46550800-46559000	Weak transcription	NH-A	brain
7	chr17:46551000-46555800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr17:46551000-46558400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr17:46551400-46556000	Weak transcription	Fetal Kidney	kidney
10	chr17:46553600-46555800	Enhancers	K562	blood
11	chr17:46554200-46564600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:46554600-46556200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr17:46554600-46556600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46554800-46555000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr17:46554800-46555800	Enhancers	GM12878-XiMat	blood
16	chr17:46554800-46556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links