Variant report

Variant	rs16957485
Chromosome Location	chr15:43489701-43489702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43489220..43491207-chr15:43498126..43500672,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166947	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1139310	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1554422	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957464	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957641	1.00[AMR][1000 genomes]
rs2012688	1.00[AMR][1000 genomes]
rs2162367	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43478600-43496200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43478800-43494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:43480200-43489800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:43480200-43490000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:43480200-43490000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:43480200-43490000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:43480200-43490400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:43480400-43489800	Strong transcription	Placenta	Placenta
9	chr15:43480400-43490200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:43480400-43491200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:43480400-43491400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:43480600-43489800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:43480600-43490400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:43480800-43489800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:43480800-43490200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:43480800-43491400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:43481000-43490400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:43481000-43490600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:43481200-43489800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:43481200-43490000	Strong transcription	Thymus	Thymus
21	chr15:43481400-43489800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:43481400-43489800	Strong transcription	Fetal Thymus	thymus
23	chr15:43481400-43489800	Strong transcription	HSMM	muscle
24	chr15:43481400-43490000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:43481400-43490000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:43481400-43490000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr15:43481400-43490400	Strong transcription	Brain Anterior Caudate	brain
28	chr15:43481400-43490400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr15:43481400-43490600	Strong transcription	Primary B cells from cord blood	blood
30	chr15:43481400-43491000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr15:43481600-43489800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:43481600-43490000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:43481600-43490400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:43481600-43490400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:43481800-43489800	Strong transcription	Brain Substantia Nigra	brain
36	chr15:43481800-43490400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:43481800-43490600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:43482000-43490400	Strong transcription	GM12878-XiMat	blood
39	chr15:43482200-43489800	Strong transcription	Colon Smooth Muscle	Colon
40	chr15:43482200-43490000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:43482200-43490600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:43482600-43489800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:43482600-43490400	Strong transcription	Liver	Liver
44	chr15:43482600-43490600	Strong transcription	Adipose Nuclei	Adipose
45	chr15:43482800-43496400	Weak transcription	A549	lung
46	chr15:43484400-43491000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:43485000-43490200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:43485000-43496400	Weak transcription	Stomach Mucosa	stomach
49	chr15:43485200-43496400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:43485400-43490000	Weak transcription	H1 Cell Line	embryonic stem cell

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