Variant report

Variant	rs16957710
Chromosome Location	chr15:73538452-73538453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73537335..73540312-chr15:73984366..73986218,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2169953	0.87[EUR][1000 genomes]
rs55934100	0.88[AFR][1000 genomes]
rs56104737	0.94[AFR][1000 genomes]
rs56740080	0.94[AFR][1000 genomes]
rs56800157	0.94[AFR][1000 genomes]
rs56989932	0.94[AFR][1000 genomes]
rs58181983	0.88[AFR][1000 genomes]
rs58534827	0.94[AFR][1000 genomes]
rs59987305	0.88[AFR][1000 genomes]
rs61686754	0.88[AFR][1000 genomes]
rs74022927	0.94[AFR][1000 genomes]
rs74025258	0.94[AFR][1000 genomes]
rs74025266	0.94[AFR][1000 genomes]
rs74025267	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
2	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
3	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
4	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
5	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
10	chr15:73524200-73547000	Weak transcription	Ovary	ovary
11	chr15:73524400-73542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:73525200-73546200	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
15	chr15:73525600-73547800	Weak transcription	Gastric	stomach
16	chr15:73526600-73541400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
18	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:73527400-73542000	Weak transcription	Brain Germinal Matrix	brain
20	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
21	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:73528800-73547000	Weak transcription	Lung	lung
23	chr15:73529000-73538600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:73529400-73547000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:73529600-73546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:73529800-73542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:73530600-73541400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:73530800-73541600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:73530800-73546000	Weak transcription	Liver	Liver
31	chr15:73530800-73551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:73531400-73547600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:73531600-73547600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:73531800-73539400	Weak transcription	Fetal Stomach	stomach
35	chr15:73532000-73538800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:73532400-73539000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:73532400-73541400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:73532400-73547600	Weak transcription	Fetal Brain Male	brain
39	chr15:73532600-73538600	Weak transcription	Brain Substantia Nigra	brain
40	chr15:73535000-73538800	Weak transcription	Aorta	Aorta
41	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr15:73535800-73543000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:73536000-73550800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:73536200-73544400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:73536400-73539200	Strong transcription	Brain Anterior Caudate	brain
47	chr15:73536400-73539600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:73536400-73559200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:73536400-73566600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:73536600-73538600	Strong transcription	Skeletal Muscle Female	skeletal muscle

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