Variant report

Variant	rs16958695
Chromosome Location	chr15:44320946-44320947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44319347..44321533-chr15:44327467..44329133,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16951321	1.00[ASW][hapmap]
rs16951483	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16958695	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44318800-44323000	Enhancers	Brain Substantia Nigra	brain
2	chr15:44319000-44323000	Enhancers	Brain Hippocampus Middle	brain
3	chr15:44319600-44322800	Enhancers	Brain Cingulate Gyrus	brain
4	chr15:44319600-44323000	Enhancers	HSMM	muscle
5	chr15:44319800-44321400	Weak transcription	Adipose Nuclei	Adipose
6	chr15:44320200-44321800	Enhancers	Hela-S3	cervix
7	chr15:44320200-44322400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:44320200-44323000	Enhancers	Fetal Heart	heart
9	chr15:44320200-44323400	Enhancers	HUVEC	blood vessel
10	chr15:44320400-44321000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:44320400-44321200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:44320400-44322200	Enhancers	NH-A	brain
13	chr15:44320400-44322400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:44320400-44322600	Enhancers	Osteobl	bone
15	chr15:44320400-44323000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:44320400-44323000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:44320400-44323000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:44320400-44323000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:44320400-44323000	Enhancers	Brain Anterior Caudate	brain
20	chr15:44320400-44323000	Enhancers	HMEC	breast
21	chr15:44320400-44323000	Enhancers	HSMMtube	muscle
22	chr15:44320400-44323000	Enhancers	NHLF	lung
23	chr15:44320600-44321000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:44320600-44321000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:44320600-44321000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:44320600-44321000	Enhancers	Fetal Muscle Leg	muscle
27	chr15:44320600-44321400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr15:44320600-44322400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:44320600-44322600	Enhancers	Brain Angular Gyrus	brain
30	chr15:44320600-44322800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr15:44320600-44323000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr15:44320600-44323000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:44320600-44323000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:44320600-44323000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:44320600-44323200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:44320600-44323400	Enhancers	NHDF-Ad	bronchial
37	chr15:44320800-44322000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr15:44320800-44322600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:44320800-44323000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr15:44320800-44323000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:44320800-44323000	Enhancers	NHEK	skin
42	chr15:44320800-44323200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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