Variant report

Variant	rs16958838
Chromosome Location	chr16:82933881-82933882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10492864	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958840	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17674039	0.86[CEU][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs17674776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.88[MKK][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55750100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780602	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55798040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56262551	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56327921	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56370659	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57969548	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58292547	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59175823	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59184408	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59618996	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59710406	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61127520	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61370328	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184577	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186640	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192135	0.94[GIH][hapmap];0.87[TSI][hapmap]
rs7206435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv573382	chr16:82905546-82950502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1064158	chr16:82919690-82935671	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82915800-82953000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:82926800-82961200	Weak transcription	HSMM	muscle
3	chr16:82932600-82934000	Enhancers	Psoas Muscle	Psoas
4	chr16:82932600-82934400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:82933000-82934200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:82933000-82934400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:82933000-82934600	Enhancers	HSMMtube	muscle
8	chr16:82933200-82934400	Enhancers	Adipose Nuclei	Adipose
9	chr16:82933200-82934400	Enhancers	Aorta	Aorta
10	chr16:82933200-82934400	Enhancers	Fetal Muscle Leg	muscle
11	chr16:82933200-82934400	Enhancers	Left Ventricle	heart
12	chr16:82933200-82934400	Enhancers	HMEC	breast
13	chr16:82933200-82934600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:82933200-82934600	Enhancers	Fetal Stomach	stomach
15	chr16:82933400-82934000	Enhancers	Right Ventricle	heart
16	chr16:82933400-82934000	Enhancers	NHEK	skin
17	chr16:82933400-82934400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:82933600-82934800	Enhancers	HUVEC	blood vessel
19	chr16:82933600-82940600	Weak transcription	Right Atrium	heart
20	chr16:82933800-82934600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr16:82933800-82947000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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